Major story arc involving Thanos , so not including minor ones where he appeares in a Warlock story and stuff, here you go:
1. God Itself
2. The Final Threat (Its now avaliable in TPB)
3. Thanos Quest
4. Infinity Gauntlet
5. Infinity Wars
6. Infinity Crusade
7. Infinity Abyss
8. Marvel Universe: The End
9. Thanos mini 1-12
10. Annihilation (very little to do with Thanos apparent from his death)
11. Thanos Imperative.
12. Avengers Assemble
13. Thanos Rising
14. (upcoming) Infinity.
Those are the main ones, barring Annihilation, that totally revolves around Thanos, most of which are written by Starlin.
Other short story arc like Thanos's appearences in KaZaar, Thor: Tears of a God, Avengers: Celestial Quest have all been retconned away.
There are other short story arcs like Cosmic Power that focuses on Thanos and Thor: Blood and Thunder
Will update anything if i can recall.
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