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This is a "3D" comic that is drawn in red and blue so that when wearing red and blue glasses you can see the comic in 3D.
Sgt Slaughter is leading some Joes on a run when they are attacked by some super strong Cobra agents. The Joes are taken out quickly and the Cobra agents leave happy with their success.
As the Joes try to figure the mystery out, we find out that Raptor is trying to combine man and bird, and he has almost accomplished it. The Joes have another run in with the super-human cobra agents and take one back to the GI Joe base.
Cobra Commander demands that they attack the Joe base with the Raptors enhanced army. The Joes create a defensive perimeter and attack the Cobra army. Unfortunately it turns out that Raptor has succeeded in creating an army of zombies!