We're talking about a relatively young Indy (think Last Crusade) vs. a relatively experience Bond (think Connery). Both have their usual equipment, and they're tracking each other through a city that's been abandoned for 100 years, overgrown with jungle. Who takes it? I'm thinking that Bond is somewhat out of his element, although I could be mistaken. He may be able to use buildings and abandoned tech to his advantage...
Once they find each other and get within range, I think Bond is the better marksman and H2H combatant, Jones, IMO, is the more resiliant of the two.
Hate to do this but I say Bond ftw. He can take it from range. The H2H would be more dificult but I think Bond has the training to take Indy out.
I think Bond has this. He's superior in close or far range. Jones is cool and all but his fighting style consists mostly of throwing haymakers that don't always get the job done. Bond is more methodical and he shouldn't have too much trouble getting past the whip.
I like Indiana Jones more than Bond, but sadly dr Jones would most probably loose. If we consider JB gadgetry and fact that he is trained assassin and spy, then we know who would be the victor. If we talking about Connery version let's see fight from From russia with love - yes, JB is not martial artist extraordinaire but we see that he can be skilled, versatile, efficient and brutal and that he can defeat trained assassin in h2h combat:
Dr. Jones is more of an adventurer and a scrapper when it comes to hand to hand combat. He was in the military, but outside of the typical training a WW I soldier experienced Jones is not that capable in the ways of combat. Bond on the other hand is trained to be a walking death machine. He is trained to be the most dangerous element in all types of environment. The only possible way that Jones could defeat Bond is by outsmarting him and using the environment to his advantage. It would be difficult though. The advantage is clearly Bond's, but if Jones used his head I think he could pull it off. He might have a bloody lip and a few broken bones. Maybe a gunshot wound.