Yes... Barbara Gordon Sr. is Jim Gordon's ex-wife who left him due to Gotham Criminals threatening her. She took James Gordon Jr. with her and he eventually ended up in a mental asylum and then a serial killer.
Barbara Gordon Jr. is Jim Gordon's niece/adopted daughter of his sister. I forget her previous sur-name but after several years Barbara changed her name officially to Gordon. Her mother, father, and I believe a brother were all murdered and/or in a car accident that killed all of them during the events that also lead to Barbara Gordon Sr. leaving. BG Jr. was never adopted by BG Sr. I also forget if BG Sr. died or not at some point, but I do know they were divorced.
Though that is not exactly accurate in Flashpoint, because idiot writers/editor have decided to mess with the canon and now Barbara Sr. and Jr. are mother and daughter apparently.
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